Programme NBIC Conference 2008

Programme: 5 March 2008

09:30 - 10:00	Opening by Prof. dr. Antoine van Kampen (Scientific director NBIC)
	BioRange Consortium Meeting 2008

10:00 - 10:50	Keynote speaker: Prof. dr. Carole Goble
	Information Management Group, University of Manchester, UK
	Title: ' The Seven Deadly Sins of Bioinformatics'
	Research group - myGrid

11:20 - 12:40	Theme: Gene expression, chair: Perry Moerland
	Martin van Vliet, Delft University of Technology / Netherlands Cancer Institute
	Pooling breast cancer datasets has a synergetic effect on.....
	Marcel van Batenburg, Academic Medical Center Amsterdam
	Tissue-preferential ridges
	Philip Kensche, CMBI, University Medical Centre St. Radboud Nijmegen
	Conservation of gene orientation in fungi
	Yanju Zhang, LIACS, Leiden University
	Screen of MicroRNA Targets in Zebrafish Using Heterogeneous Data...

14:00 - 15:00	Theme: Genomics, chair: Jacques Leunissen
	Victor Guryev, Hubrecht Institute
	Copy-number variation in genomes of laboratory rat strains...
	Fabrice Colas, LIACS, Leiden University
	A KDD Scenario for Complex Osteo Arthritis Subtypes
	Identification from Severity Scores
	Martin Oti, CMBI, University Medical Centre St. Radboud, Nijmegen
	Clustering the OMIM and POSSUM disease phenotype data

15:00 - 15:40	Theme: BioAssist
	Miaomiao Zhou, CMBI, University Medical Centre St. Radboud, Nijmegen
	LocateP: Genome-scale subcellular-location predictor for bacterial..
	Margriet Hendriks, University Medical Centre Utrecht
	Netherlands Metabolomics Centre data processing support platform

16:10 - 18:00	3 parallel workshops:
	- Workshop 1: Workflow management: Taverna
	- Workshop 2: Valorisation: usability and exploitation
	- Workshop 3: Speed Reading

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Programme: 6 March 2008

09:00 - 09:50	Keynote speaker: Dr. Christian Conrad
	EMBL, Heidelberg
	Title: 'Automatic screening in genome wide RNAi live cell-based assays'
	Abstract - Research

09:50 - 10:30	Theme: Computational Biology, chair: Gert Vriend
	Sander Nabuurs, CMBI, Radboud UMC, Nijmegen/
	It's good to be flexible - considering protein flexibility in structure based
	drug design
	Daan van Schalkwijk, TNO Quality of Life / LACDR
	Particle Profiler: Development of a Population Dynamics...

11:00 - 12:20	Theme: Metabolic Networks, chair: Hans van Beek
	Harmen Draisma, LACDR, Leiden University
	Similarities and differences in lipidomics profiles among...
	Yunlei Li, Delft University of Technology
	Metabolic pathway alignment between species using a
	comprehensive, flexible similarity measure
	Thomas Binsl, IBIVU, VU University Amsterdam
	FluxEs: A Framework for Metabolic Flux Estimation
	Richard Notebaart, CMBI, Radboud UMC, Nijmegen
	Co-regulation of metabolic genes is better explained by...

13:50 - 14:50	Theme: Protein Networks, chair: Marcel Reinders
	Jos Boekhorst, Utrecht University
	Overlap between phosphoproteomics datasets of eukaryotic...
	Patrick Kemmeren, Genomics Lab, University Medical Centre Utrecht
	An Accurate Physical Interactome Map of Saccharomyces cerevisiae
	Herman van Haagen, Leiden Univesity Medical Centre
	Prediction of protein-protein interactions based on literature...

15:20 - 16:10	Keynote speaker: Dr. Piero Carninci
	RIKEN, Genome Science Laboratory, Japan
	Title: ' Transcriptome complexity analyzed by high-throughput
	sequencing analysis '
	Abstract - Research