BioRange Project Meeting 2010

With the BioRange Project Meeting we aim at bringing together all the BioRange participants to exchange information on the current NBIC research projects. The meeting is an internal NBIC meeting (only NBIC project participants can register for the meeting), and it is obligatory for all researchers who participate in a BioRange project and who have a research position funded by NBIC.

Date: 11 October 2010
Venue: De Reehorst in Ede
Deadline for abstract submission: 1 September 2010
Deadline for registration: 15 September 2010

Final programme


09:00 - 09:25	Registration & coffee/tea

09:25 - 09:30	Opening by Marcel Reinders

09:30 - 10:00	Plenary presentation: Philip Lijnzaad
	Modelling incongruent redundancy

10:00 - 10:30	Plenary presentation: Christin Christin
	Time Alignment Strategies for Accurate Alignment of Complex
	Proteomics Samples

10:30 - 11:00	Coffee/tea

11:00 - 12:30	Parallel sessions
	Session A (Chair: Jaap Heringa)
	Wilco Fleuren, Creating disease related gene networks using
	literature mining
	Judith Risse, Pathway Reconstruction with Text Mining - Current
	Status of Affairs
	Thomas Binsl, Metabolic flux determination under non-steady state
	conditions in human faecal microbiota
	Hong Luo, Knowledgebase construction and biological
	significance investigation of amino acid repeats in proteins

	Session B (Chair: Marcel Reinders)
	John van Dam, Evolution of the Ras-like small GTPases and their regulators
	Victor de Jager, Monitoring strain diversity in metagenomics data using
	meta-MLST SNP profiling
	Joachim Bargsten, Computational epigenomics of plant genes
	René Wardenaar, Mapping genome-wide epigenetic inheritance patterns in
	Arabidopsis

12.30 - 13:30	Lunch

13:30 - 13:45	Rob Hooft - NBIC BioAssist overview

13:45 - 14:15	Dr. E.C.M. (Ed) Noijons
	Bibliographic analysis of bioinformatics research.
	Senior researcher and research fellow at CWTS
	Centre for Science and Technology Studies, Leiden University

14:15 - 15:45	Parallel sessions

	Session C (Chair: Jaap Heringa)
	Han Rauwerda, Integrating heterogeneous sequence information for
	transcriptome-wide microarray design; a microarray experiment for finding
	intra and interindividual differences in Zebrafish oocytes usingarrays built with
	this design.
	Ewald van Dyk, Detecting significantly correlated gene clusters and
	their interactions in a continuous scale-space.
	Umesh Kumar Nandal, Compendium database of rodents and human
	metabolic syndrome related datasets
	Evert Bosdriesz, The cost and benefit of enzyme expression

	Session D (Chair: Marcel Reinders)
	René Pool, The Effective Interaction Between Proteins by Coarse-Grained
	Molecular Simulation
	Arnold Kuzniar, Improved detection of connected clusters in
	multi-parametric protein networks
	Bastiaan van den Berg, Sequence-based prediction of protein
	secretion success
	Jumamurat Bayjanov, Genotype-phenotype association analysis of
	Lactobacillus plantarum and Lactococcus lactis strains

15:45 - 16:15	Coffee/tea

16:15 - 17:00	Plenary presentation by Gunnar Klau, CWI, Amsterdam
	Operations Research meets biology

17:00 - 18:00	Closing & drinks/snacks

Registration & abstract submission

Please register for the meeting by filling out the registration form

All PhD-students/postdocs are asked to submit an abstract on their work before September 1st. Abstracts will be selected for presentation.

Please submit your abstract by sending it by E-mail (max. half A4) to office@removethis.nbic.nl. Clearly mention [ABSTRACT] in the subject header and mention your name, project number and the title of your presentation in the body text.