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Publication overview

Organization of ventricular fibrillation in the human heart

ten Tusscher, K. H.Hren, R.Panfilov, A. V.

Circ.Res. 2007, 100(12)

http://www.ncbi.nlm.nih.gov/pubmed/17540975

Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays

French, P. J.Peeters, J.Horsman, S.Duijm, E.Siccama, I.van den Bent, M. J.Luider, T. ...

Cancer Res. 2007, 67(12): 5635

http://www.ncbi.nlm.nih.gov/pubmed/17575129

Relative effects of barrier precautions and topical antibiotics on nosocomial bacterial transmission: results of multi-compartment models

Boldin, B.Bonten, M. J.Diekmann, O.

Bull.Math.Biol. 2007, 69(7): 2227

http://www.ncbi.nlm.nih.gov/pubmed/17453305

Fasting induces a biphasic adaptive metabolic response in murine small intestine

Sokolovic, M.Wehkamp, D.Sokolovic, A.Vermeulen, J.Gilhuijs-Pederson, L. A.van Haaften...

BMC.Genomics 2007, 8: 361

http://www.ncbi.nlm.nih.gov/pubmed/17925015

Penalized canonical correlation analysis to quantify the association between gene expression and DNA markers

Waaijenborg, S.Zwinderman, A.

BMC.Bioinformatics. 2007

Exploiting combinatorial cultivation conditions to infer transcriptional regulation

Knijnenburg, T. A.de Winde, J. H.Daran, J. M.ran-Lapujade, P.Pronk, J. T.Reinders, M....

BMC Genomics 2007, 8: 25

http://dx.doi.org/10.1186/1471-2164-8-25

Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate

Datson, N. A.Morsink, M. C.Atanasova, S.Armstrong, V. W.Zischler, H.Schlumbohm, C.Dut...

BMC Genomics 2007, 8: 190

http://www.ncbi.nlm.nih.gov/pubmed/17592630

Error-threshold exists in fitness landscapes with lethal mutants

Takeuchi, N.Hogeweg, P.

BMC Evol.Biol. 2007, 7: 15

http://www.ncbi.nlm.nih.gov/pubmed/17286853

SIRAC: Supervised identification of regions of abberation in CGH datasets

Lai, C.Horlings, H.van den Vijver, M. J.Wessels, L. F. A.Reinders, M. J. T.

BMC BioinformaticsLai2007 2007

Statistical validation of megavariate effects in ASCA

Vis, D. J.Westerhuis, J. A.Smilde, A. K.van der Greef, J.

BMC Bioinformatics 2007, 8(1): 322

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Orthology prediction at scalable resolution by phylogenetic tree analysis

van der Heijden, R. T.Snel, B.van Noort, V.Huynen, M. A.

BMC Bioinformatics 2007, 8: 83

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Advancing translational research with the Semantic Web

Ruttenberg, A.Clark, T.Bug, W.Samwald, M.Bodenreider, O.Chen, H.Doherty, D.Forsberg, ...

BMC Bioinformatics 2007, 8

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation

Jelier, R.Jenster, G.Dorssers, L. C.Wouters, B. J.Hendriksen, P. J.Mons, B.Delwel, R....

BMC Bioinformatics 2007, 8: 14

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties

Boekhorst, J.Snel, B.

BMC Bioinformatics 2007, 8: 356

http://www.ncbi.nlm.nih.gov/pubmed/17888146

Genomewide identification of prednisolone-responsive genes in acute lymphoblastic leukemia cells

Tissing, W. J.den Boer, M. L.Meijerink, J. P.Menezes, R. X.Swagemakers, S.van der Spe...

Blood 2007, 109(9): 3929

http://www.ncbi.nlm.nih.gov/pubmed/17218380

Distinct methylation patterns among infants with MLL rearranged acute lymphoblastic leukemia

Stumpel, D. J. P. M.Schneider, P.Van Roon, E. H. J.Boer, J. M.Menezes, R. X.Pieters, ...

Blood 2007, 110(11): 822

ISI:000251100803576

Retroviral vector insertion sites associated with dominant hematopoietic clones mark "stemness" pathways

Kustikova, O. S.Geiger, H.Li, Z.Brugman, M. H.Chambers, S. M.Shaw, C. A.Pike-Overzet,...

Blood 2007, 109(5): 1897

http://dx.doi.org/10.1182/blood-2006-08-044156

Taking the example of computer systems engineering for the analysis of biological cell systems

Pronk, T. E.Pimentel, A. D.Roos, M.Breit, T. M.

Biosystems 2007

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

DNA computing of solutions to knapsack problems

Henkel, C. V.Back, T.Kok, J. N.Rozenberg, G.Spaink, H. P.

Biosystems 2007, 88(1): 156

http://www.ncbi.nlm.nih.gov/pubmed/16860927

The formation of fibrils by intertwining of filaments: model and application to amyloid Abeta protein

van, Gestel J.de Leeuw, S. W.

Biophys.J 2007, 92(4): 1157

http://www.ncbi.nlm.nih.gov/pubmed/17114229

Sequence similarity searches

Heringa, J.Pirovano, W.

Bioinformatics Methods Express Series 2007

An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences

Ye, K.Kosters, W. A.Ijzerman, A. P.

Bioinformatics 2007, 23(6): 687

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Moderated statistical tests for assessing differences in tag abundance

Robinson, M. D.Smyth, G. K.

Bioinformatics 2007, 23(21): 2881

http://apps.isiknowledge.com/full_record.do?product=WOS&search_mode=Ge...

A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data

Post, L. J.Roos, M.Marshall, M. S.Driel, R. V.Breit, T. M.

Bioinformatics 2007

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Optimized design and assessment of whole genome tiling arrays

Graf, S.Nielsen, F. G.Kurtz, S.Huynen, M. A.Birney, E.Stunnenberg, H.Flicek, P.

Bioinformatics 2007, 23(13)

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Analyzing gene expression data in terms of gene sets: methodological issues

Goeman, J. J.Buhlmann, P.

Bioinformatics 2007, 23(8): 980

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogaster

Fomekong-Nanfack, Y.Kaandorp, J. A.Blom, J.

Bioinformatics 2007, 23(24): 3356

http://www.ncbi.nlm.nih.gov/pubmed/17893088

Assessment of phylogenomic and orthology approaches for phylogenetic inference

Dutilh, B. E.van Noort, V.van der Heijden, R. T.Boekhout, T.Snel, B.Huynen, M. A.

Bioinformatics 2007, 23(7): 815

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Computational methods for diffusion-influenced biochemical reactions

Dobrzynski, M.Rodriguez, J. V.Kaandorp, J. A.Blom, J. G.

Bioinformatics 2007, 23(15): 1969

http://www.ncbi.nlm.nih.gov/pubmed/17537752

Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes

de Ridder, J.Kool, J.Uren, A.Bot, J.Wessels, L.Reinders, M.

Bioinformatics 2007, 23(13)

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases

Cavalieri, D.Castagnini, C.Toti, S.Maciag, K.Kelder, T.Gambineri, L.Angioli, S.Dolara...

Bioinformatics 2007, 23(19): 2631

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes

Blom, E. J.Bosman, D. W.van Hijum, S. A.Breitling, R.Tijsma, L.Silvis, R.Roerdink, J....

Bioinformatics 2007, 23(9): 1161

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Expression and genomic profiling of colorectal cancer

Cardoso, J.Boer, J.Morreau, H.Fodde, R.

Biochim Biophys Acta 2007, 1775(1): 103

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Association between the DTNBP1 gene and intelligence: a case-control study in young patients with schizophrenia and related disorders and unaffected siblings

Zinkstok, J. R.de, Wilde O.van Amelsvoort, T. A.Tanck, M. W.Baas, F.Linszen, D. H.

Behav.Brain Funct. 2007, 3: 19

http://www.ncbi.nlm.nih.gov/pubmed/17445278

MODEL SELECTION FOR PENALIZED SPLINE SMOOTHING USING AKAIKE INFORMATION CRITERIA

Wager, CarrieVaida, FlorinKauermann, Göran

Australian & New Zealand Journal of Statistics 2007, 49(2): 173

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

PO3-77 Particle Profiler: a model analysis of lipoprotein delipidation

van Schalkwijk, D. B.

Atherosclerosis Supplements 2007, 8(1): 36

Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat culatures

de Nicola, R.Hazelwood, L. A.de Hulster, E. A. F.Walsh, M. C.Knijnenburg, T. A.Reinde...

Applied and Environmental MicrobiologyNicola2007 2007

A comparison of two methods for finding groups using heat maps and model based clustering

Colas, F.Meulenbelt, I.Houwing-Duistermaat, J.Kok, J.Slagboom, E.

Applications and Innovations in Intelligent Systems XV 2007: 119

A second-order, unconditionally positive, mass-conserving integration scheme for biochemical systems

Sommeijer, B.Kooi, B. W.Burghard, H.Bruggeman, J.

Appl.Num.math. 2007

Physiological and transcriptional presponses of saccaromyces cerevisiae to zinc limitation in chemostat cultures

Nicola, R. D.Hazelwood, L. A.Hulster, E. A. F. D.Walsh, M. C.Knijnenburg, T. A.Reinde...

Appl Environ Microbiol 2007, 73(23): 7680

Increased levels of circulating endothelial progenitor cells and circulating endothelial nitric oxide synthase in patients with gliomas

Zheng, P. P.Hop, W. C.Luider, T. M.Sillevis Smitt, P. A.Kros, J. M.

Ann Neurol 2007, 62(1): 40

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Assessing the statistical validity of proteomics based biomarkers

Smit, S.van Breemen, M. J.Hoefsloot, H. C.Smilde, A. K.Aerts, J. M.de Koster, C. G.

Anal Chim Acta 2007, 592(2): 210

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

An algorithm to estimate the importance of bacterial acquisition routes in hospital settings

Bootsma, M. C.Bonten, M. J.Nijssen, S.Fluit, A. C.Diekmann, O.

Am.J Epidemiol. 2007, 166(7): 841

http://www.ncbi.nlm.nih.gov/pubmed/17644823

Adenine nucleotide-creatine-phosphate module in myocardial metabolic system explains fast phase of dynamic regulation of oxidative phosphorylation

van Beek, J. H.

Am J Physiol Cell Physiol 2007, 293(3)

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Distinctive expression of chemokines and transforming growth factor-beta signaling in human arterial endothelium during atherosclerosis

Volger, O. L.Fledderus, J. O.Kisters, N.Fontijn, R. D.Moerland, P. D.Kuiper, J.van Be...

Am J Pathol 2007, 171(1): 326

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

MYO15A (DFNB3) mutations in Turkish hearing loss families and functional modeling of a novel motor domain mutation

Kalay, E.Uzumcu, A.Krieger, E.Caylan, R.Uyguner, O.Ulubil-Emiroglu, M.Erdol, H.Kayser...

Am J Med Genet A 2007, 143(20): 2382

http://www.ncbi.nlm.nih.gov/pubmed/17853461

Genetic polymorphisms related to delirium tremens: a systematic review

van Munster, B. C.Korevaar, J. C.de Rooij, S. E.Levi, M.Zwinderman, A. H.

Alcohol Clin Exp Res 2007, 31(2): 177

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Using sorting by reversal: breakpoint graph for gene assembly in ciliates

Hoogeboom, H. J.Brijder, R.

AIP Conference Proceedings 2007

http://dx.doi.org/10.1063/1.2793404

A simplified volume under the ROC hypersurface

Landgrebe, T. C. W.Duin, R. P. W.

Africa research journal 2007, 98(3): 94

On Emotion, Anticipation and adaption: Investigating the Potential of Affect-Controlled Selection of Anticipatory Simulation in Artificial Adaptive Agents

Broekens, J.Walter, A.verbeek, F. J.

Adaptive Behavior 2007