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Publication overview

Selecting structural base classifiers for graph-based multiple classifier systems

Lee, W.J.Duin, R. P. W.Bunke, H.

Lecture notes in computer science 2010, 5997: 155

Statistical analysis of gait data to assist clinical decision making

Koktas, N.S.Duin, R. P. W.

Lecture notes in computer science 2010

On improving dissimilarity-based classifications using a statistical similarity seasure

Kim, S.W.Duin, R. P. W.

Lecture notes in computer science 2010

An emperical comparison of kernel-based and dissimilarity-based feature spaces

Kim, S.W.Duin, R. P. W.

Lecture notes in computer science 2010

A texton-based approach for the classification of lung parenchyma in CT images

Gangeh, M.J.Sorensen, L.Shaker, S.B.Kamel, M.S.de Bruijne, M.Loog, M.

Lecture notes in computer science 2010

Non-euclidean dissimilarities: causes and informativeness

Duin, R.P.W.Pekalska, E.M.

Lecture notes in computer science 2010

Feature-based dissimilarity space classification

Duin, R.P.W.Loog, M.Pekalska, E.M.Tax, D.M.J.

Lecture notes in computer science 2010

Finding wormholes with Flickr Geotags

Clements, M.Serdyukov, P.de Vries, A. P.Reinders, M. J. T.

Lecture notes in computer science 2010, 5993: 658

http://www.springerlink.com/content/2725712457234423/fulltext.pdf

Constrained parameter estimation for semi-supervised learning: The case of the nearest mean classifier

Loog, M.

Lecture notes in artificial intelligence 2010, 6322: 291

http://www.springerlink.com/content/h8157g533678651j/fulltext.pdf

Molecular profiling of cytomegalovirus induced human CD8+ T cell differentiation

Hertoghs, KMLMoerland, PM

Journal of Clinical Investigation 2010

Time Alignment Algorithms Based on Selected Mass Traces for Complex LC-MS Data

Christin, C.Hoefsloot, H. C.Smilde, A. K.Suits, F.Bischoff, R.Horvatovich, P. L.

J Proteome Res 2010, 9(3): 1483

http://www.ncbi.nlm.nih.gov/pubmed/20070124

Comparison and integration of target prediction algorithms for microRNA studies

Zhang, Y.Verbeek, F. J.

J Integr Bioinform 2010, 7(3)

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

An evaluation of the performance of three semantic background knowledge sources in comparative anatomy

van Ophuizen, E. A.Leunissen, J. A.

J Integr Bioinform 2010, 7(3)

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Mining and analysing spatio-temporal patterns of gene expression in an integrative database framework

Belmamoune, M.Potikanond, D.Verbeek, F. J.

J Integr Bioinform 2010, 7(3)

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

e-BioFlow: Improving Practical Use of Workflow Systems in Bioinformatics.

Wassink, I.Ooms, M.Neerincx, P.van der Veer, G.Rauwerda, H.Leunissen, J.A.M.Breit, T....

ITBAM 2010 2010

Tools in Scientific Workflow Composition

Kok, J. N.Lamprecht, A.L.Wilkonson, M.D.

Isola 2010 2010: 258

Combining Subgroup Discovery and Permutation Testing to Reduce Reduncancy

de Bruin, J.S.Kok, J. N.

Isola 2010 2010

Radiation-associated breast tumors display a distinct gene expression profile

Broeks, A.Braaf Linde, M.Wessels, L. F. A.van de Vijver, Marc J.de Bruin, M. L.Stoval...

International journal of radiation oncology biology physics 2010, 76(2): 540

http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6T7X-4Y52ST0-...

Conceptual language models for domain-specific retrieval

Meij, E.Trieschnigg, D.de Rijke, M.Kraaij, W.

Information processing management 2010

The Improbability of Harris Interest Points

Loog, M.Lauze, F.

Ieee transactions on pattern analysis and machine intelligence 2010, 32(6): 1141

http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5432198

Quantitative comparison of spot detection methods in fluorescence microscopy

Smal, I.Loog, M.Niessen, W.Meijering, E.

Ieee transactions on medical imaging 2010, 29(2): 282

http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5109713

Using multiscale spectra in regularizing covariance matrices for hyperspectral image classification

Jensen, A. F. C.Loog, M.Solberg, A. H. S.

Ieee transactions on geoscience and remote sensing 2010, 48(4): 1851

http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5393091

Sperical embeddings for non-euclidean dissimilarities

Wilson, R.C.Hancock, E.R.Pekalska, E.M.Duin, R.P.W.

IEEE conference on Computer Vision and Pattern Recognition (CVPR) 2010

InfraWatch: Data management of large systems for monitoring infrastructural performance

Knobbe, A.Blockeel, H.Koopman, A.Calders, T.Obladen, B.Bosma, C.Galenkamp, H.Koenders...

IDA 2010

Dissimilarity-based detection of schizophrenia

Ulas, A.Duin, R.P.W.Castellani, U.Loog, M.Bicego, M.Murino, M.

ICPR 2010 workshop on Pattern Recognition Challenges in FMRI Neuroimaging 2010

The transcriptional response to chronic stress and glucocorticoid receptor blockade in the hippocampal dentate gyrus

Datson, Nicole A.Speksnijder, NielsMayer, Joseph L.Steenbergen, Peter J.Korobko, Oksa...

Hippocampus 2010

http://www.ncbi.nlm.nih.gov/pubmed/21184481

Evaluation of gene expression signatures predictive for cytogenetic and molecular subtypes of pediatric acute myeloid leukemia

Balgobind, Brian V.van den Heuvel-Eibrink, Marry M.Menezes, Renee X.Reinhardt, DirkHo...

Haematologica 2010

http://www.ncbi.nlm.nih.gov/pubmed/20971820

Influence of handshape information on automatic sign language recognition

ten Holt, G. A.Reinders, M. J. T.Hendriks, E. A.de Ridder, H.van Doorn, A. J.

Gesture in embodied communication and human computer interaction 2010: 301

XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments

Swertz, M. A.van, der V.Tesson, B. M.Scheltema, R. A.Arends, D.Vera, G.Alberts, R.Dij...

Genome Biol 2010, 11(3)

http://www.ncbi.nlm.nih.gov/pubmed/20214801

Challenges of molecular nutrition research 6: The Nutritional Phenotype database to store, share and evaluate nutritional systems biology studies

van Ommen, BenBouwman, JildauDragsted, LarsDrevon, Christian A.Elliott, RuanPhilipKap...

Genes Nutr 2010

Connecting The Human Variome Project to Nutrigenomics

Kaput, J.Evelo, C. T.Perozzi, G.Van Ommen, B.Cotton, R.

Genes Nutr 2010

Experimental optimization by evolutionary algorithms

Bäck, T.Knowles, J.Shir, O.M.

GECCO 2010

The extracellular biology of the lactobacilli

Kleerebezem, M.Hols, P.Bernard, E.Rolain, T.Zhou, M.Siezen, R. J.Bron, P. A.

FEMS Microbiol Rev 2010, 34(2): 199

http://www.ncbi.nlm.nih.gov/pubmed/20088967

Penalized canonical correlation analysis: unraveling the genetic background of complex diseases

Waaijenborg, S.

Faculty of Medicine 2010

Tumour-specific methylation of PTPRG intron 1 locus in sporadic and Lynch syndrome colorectal cancer

van Roon, Eddy H. J.de Miranda, Noël F. C. C.van Nieuwenhuizen, Merlijn P.de Meijer, ...

European Journal of Human Genetics: EJHG 2010

http://www.ncbi.nlm.nih.gov/pubmed/21150880

Current technological challenges in biomarker discovery and validation

Horvatovich, P. L.Bischoff, R.

Eur J Mass Spectrom (Chichester, Eng) 2010, 16(1): 101

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Proof of Concept: Concept-based Biomedical Information Retrieval

Trieschnigg, R.B.

CTIT 2010

http://eprints.eemcs.utwente.nl/18216/

Integration of DNA copy number alterations and prognostic gene expression signatures in breast cancer patients

Horlings, H. M.Lai, C.Nuyten, D. S. A.Halfwerk, H.Kristel, P.van Beers, E.Joosse, S. ...

Clinical breast cancer 2010, 16: 651

Integrated analysis of microRNA and mRNA expression profiles in physiological myelopoiesis: role of hsa-mir-299-5p in CD34+ progenitor cells commitment

Tenedini, E.Roncaglia, E.Ferrari, F.Orlandi, C.Bianchi, E.Bicciato, S.Tagliafico, E.F...

Cell Death and Dis 2010, 1(2)

http://dx.doi.org/10.1038/cddis.2010.5

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentation

Peric-Hupkes, D.Meuleman, W.Pagie, L.Bruggeman, S. W. M.Solovei, I.Brugman, W.Graf, S...

Cell 2010, 38(4): 603

http://www.ncbi.nlm.nih.gov/pubmed/20513434

Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach

Mattison, J.Kool, J.Uren, A. G.de Ridder, J.Wessels, L. F. A.Jonkers, J.Bignell, G. R...

Cancer research 2010, 70: 883

http://www.ncbi.nlm.nih.gov/pubmed/20103622

Insertional mutagenesis in mice deficient for p15Ink4b, p16Ink4a, p21Cip1, and p27Kip1 reveals cancer gene interactions and correlations with tumor phenotypes

Kool, JaapUren, Anthony G.Martins, Carla P.Sie, Daoudde Ridder, JeroenTurner, Geoffre...

Cancer Research 2010, 70(2): 520

http://www.ncbi.nlm.nih.gov/pubmed/20068150

Stratified generalized procrustes analysis

Bartoli, A.Pizarro, D.Loog, M.

British Machine Vision Conference 2010 2010

Developing computational model-based diagnostics to analyse clinical chemistry data

van Schalkwijk, D. B.van, Bochove K.van, Ommen B.Freidig, A. P.van Someren, E. P.van ...

Brief Bioinform 2010

http://www.ncbi.nlm.nih.gov/pubmed/20056728

Optical advances in skeletal imaging applied to bone metastases

Snoeks, E.Khmelinskii, A.Lelieveldt, B. P. F.Kaijzel, E. L.Lowik, Cwgm

Bone 2010

http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6T4Y-50P9H1X-...

Integrating heterogeneous sequence information for transcriptome-wide microarray design; a Zebrafish example

Rauwerda, Hande Jong, Markde Leeuw, WimSpaink, HermanBreit, Timo

BMC Research Notes 2010, 3(1): 192

http://www.biomedcentral.com/1756-0500/3/192

Expression of a retinoic acid signature in circulating CD34 cells from coronary artery disease patients

van der Pouw, Kraan, TinekeSchirmer, StephanFledderus, JoostMoerland, PerryBaggen, Jo...

BMC Genomics 2010, 11(1): 388

http://dx.doi.org/10.1186/1471-2164-11-388

Small RNA expression and strain specificity in the rat

Linsen, S. E.de Wit, E.de Bruijn, E.Cuppen, E.

BMC Genomics 2010, 11: 249

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor

Frijters, R.Fleuren, W.Toonen, E. J.Tuckermann, J. P.Reichardt, H. M.van der Maaden, ...

BMC Genomics 2010, 11: 359

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Early onset MSI-H colon cancer with MLH1 promoter methylation, is there a genetic predisposition?

van Roon, Eddy H. J.van Puijenbroek, MarjoMiddeldorp, Annekevan Eijk, Ronaldde Meijer...

BMC Cancer 2010, 10: 180

http://www.ncbi.nlm.nih.gov/pubmed/20444249