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Publication overview

Learning Bayesian network parameters under order constraints

Feelders, A.Van de Gaag, L. C.

Intern J of Approximate Reasoning 2006, 42(1): 37

Complexity of bio-computation: symbolic dynamics in membrane systems

Muskulus, M.Brijder, R.

Int J of foundations of computer science 2006

Approximate power and sample size calculations with the Benjamini-Hocheberg method

Ferreira, J. A.Zwinderman, A. H.

Int J of Biostatistics 2006, 2(1)

Integrins of Anopheles gambiae and a putative role of a new beta integrin, BINT2, in phagocytosis of E. coli

Moita, L. F.Vriend, G.Mahairaki, V.Louis, C.Kafatos, F. C.

Insect Biochem Mol Biol 2006, 36(4): 282

Heterogenous information Systems: bridging the gap of time and space. Management and retrieval of spatio-temporal gene Expression data

Belmamoune, M.verbeek, F. J.

InSCit2006 2006, 1: 53

Improving a local learning technique for queue wait time predictions

Li, H.Chen, J.Tao, Y.Groep, D.Wolters, L.

in proceedings of the 6th IEEE International Symposium on Cluster Computing and the Grid (CCGrid2006) 2006: 335

Experiental sampling in multimedia systems

Kankanhalli, M. S.Wang, J.Jain, R.

IEEE transactions on multimedis 2006, 8: 937

Prorenin induces intracellular signaling in cardiomyocytes independently of angiotensin II

Saris, J. J.Hoen, P. A.Garrelds, I. M.Dekkers, D. H.den Dunnen, J. T.Lamers, J. M.Jan...

Hypertension 2006, 48(4): 564

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Human-Centered Aspects

Kulyk, O.Kosara, R.Urquiza, J.Wassink, I.Kerren, E.Ebert, A.Meyer, J.

Human-Centered Visualization Environments 2006, 4417: 13

Interacting with visualisations

Bierz, T.Fikkert, W.Jankun-Kelly, T. J.D'Ambros, M.Kerren, E.Ebert, A.Meyer, J.

Human-centered visualisation environments 2006

Estimating haplotype effects on dichotomous outcome for unphased genotype data using a weighted penalized log-likelihood approach

Souverein, O. W.Zwinderman, A. H.Tanck, M. W.

Hum Hered 2006, 61(2): 104

Bioinformatics methods for identifying candidate disease genes

van Driel, M. A.Brunner, H. G.

Hum Genomics 2006, 2(6): 429

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Comparison of 3D organization of ventricular fibrillation in hearts of different animals and the human heart

Ten Tusscher, K. H. W. J.Panfilov, A. V.

Heart Rhythm 2006: 261

Conditions for spiral breakup in the human ventricles

Panfilov, A. V.Hren, R.ten Tusscher, K. H.Keldermann, R. H.

Heart Rhythm 2006: 186

The biological carbon pump revisited: feedback mechanisms between climated and the refield ratio

Dijkstra, H. A.Bruggeman, J.Omta, A. W.Kooijman, S. A. L. M.

Geophys.Res.Let. 2006

http://www.phys.uu.nl/%7Edijkstra/pubs2006.html

Genetic variation in the zebrafish

Guryev, V.Koudijs, M. J.Berezikov, E.Johnson, S. L.Plasterk, R. H.van Eeden, F. J.Cup...

Genome Res 2006, 16(4): 491

Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis

Berezikov, E.van Tetering, G.Verheul, M.van de Belt, J.van Laake, L.Vos, J.Verloop, R...

Genome Res 2006, 16(10): 1289

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Detecting Transcriptionally Active Regions Using Genome Tiling Arrays

Halasz, G.Van Batenburg, M. F.Perusse, J.Hua, S.White, K. P.Bussemaker, H. J.

Genome Biology 2006, 7(7)

Benchmarking ortholog identification methods using functional genomics data

Hulsen, T.Huynen, M. A.de Vlieg, J.Groenen, P. M.

Genome Biol 2006, 7

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Optimal design and analysis of genetic studies on gene expression

Fu, J.Jansen, R. C.

Genetics 2006, 172(3): 1993

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Simultaneous estimation of gene-gene and gene-environment interactions for numerous loci using double penalized log-likelihood

Tanck, M. W.Jukema, J. W.Zwinderman, A. H.

Genet Epidemiol 2006, 30(8): 645

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Red queen dynamics in a predator-prey ecosystem

Wiering, M. A.de Jong, E. D.de Back, W.

GECCO '06 2006

http://igitur-archive.library.uu.nl/vet/2007-0302-210407/wiering_06_re...

The parellel nash memory for asymmetric games

Oliehoek, F. A.Vlassis, N.de Jong, E. D.

GECCO '06 2006

http://people.cs.uu.nl/dejong/publications/parnashgecco06.pdf

DECA: Dimension extracting coevolutionary algrorithm

de Jong, E. D.Bucci, A.

GECCO '06 2006

http://people.cs.uu.nl/dejong/publications/deca.pdf

Combining gradient techniques for numerical multi-objective evolutionary optimization

de Jong, E. D.Bosman, P. A. N.

GECCO '06 2006

http://people.cs.uu.nl/dejong/index.html#publications

Sub-type Specific Sites for SMAD Receptor Binding Identified by Sequence Comparison using "Sequence Harmony"

Feenstra, K. A.Pirovano, W.Heringa, J.

From Computational Biophysics to Systems Biology 2006, 34: 73

Common pathological mechanisms in mouse models for muscular dystrophies

Turk, R.Sterrenburg, E.van der Wees, C. G.de Meijer, E. J.de Menezes, R. X.Groh, S.Ca...

FASEB J 2006, 20(1): 127

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Embryonic stem cell proteomics

van Hoof, D.Mummery, C. L.Heck, A. J.Krijgsveld, J.

Expert Rev Proteomics 2006

SMs-emoa: Multiobjective selection based on dominated hypervolume

Emmerich, M. T. M.

European J of Operation Research 2006

A text-mining analysis of the human phenome

van Driel, M. A.Bruggeman, J.Vriend, G.Brunner, H. G.Leunissen, J. A.

Eur J Hum Genet 2006, 14(5): 535

Novel early target genes of parathyroid hormone-related peptide in chondrocytes

Hoogendam, J.Parlevliet, E.Miclea, R.Lowik, C. W.Wit, J. M.Karperien, M.

Endocrinology 2006, 147(6): 3141

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus

Imbert, I.Guillemot, J. C.Bourhis, J. M.Bussetta, C.Coutard, B.Egloff, M. P.Ferron, F...

Embo J 2006, 25(20): 4933

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Frequent Subgraph Miners: Runtimes Don't Say Everything, Mining and Learning with Graphs (MLG 2006)

Nijssen, S.Kok, J. N. Series, Editor

ECML/PKDD 2006 2006

The promise of a virtual lab in drug discovery

Rauwerda, H.Roos, M.Hertzberger, B. O.Breit, T. M.

Drug Discov Today 2006, 11(5): 228

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Object presentation, sample size, and data set complexity

Duin, R. P.Pekalska, E. M.Basu, M.Ho, T. K.

Data Complexity in Pattern Recognition 2006: 25

Natural diversity and adaptive responses of Lactococcus lactis

Hylckama Vlieg, J. E.Rademaker, J. L.Bachmann, H.Molenaar, D.Kelly, W. J.Siezen, R. J...

Curr Opin Biotechnol 2006, 17(2): 183

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Mitochondria, hydrogenosomes and mitosomes: products of evolutionary tinkering!

Hackstein, J. H.Tjaden, J.Huynen, M.

Curr Genet 2006, 50(4): 225

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Bagged K-means clustering improves accuracy when clustering metabolic data

Hageman, J. A.van den Berg, R. A.Westerhuis, J. A.Hoefsloot, H. C. J.Smilde, A. K.

Crit Rev in Anal Chem 2006, 36: 21

Tribler: A social-based Peer-to-Peer system

Pouwelse, J.Garbacki, P.Wang, J.Bakker, A.Yang, J.Losup, A.Epema, D.Reinders, M. J. T...

Concurrency and computation: practice and experience 2006, 20(2): 127

Problem-solving environments for biological morphogenesis

Sloot, P. M. A.Kaandorp, J. A.Merks, R. M. H.Hogeweg, P.Hoekstra, A. G.

Computer Science English 2006

Learning the Comlete-Basis-Functions Parameterization for the Optimization of Dynamic Molecular Alignment by ES. IDEAL 2006

Shir, O. M.Kok, J. N.Back, T.Vrakking, M. J. J.

Computer Science 2006, 4224: 410

An even faster algorithm for ridge regression of reduced rank data

Turlach, B.

Computational Statistics & Data Analysis 2006, 50(3): 642

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

Fast and compact smoothing on large multidimensional grids

Eilers, Paul H. C.Currie, Iain D.Durbán, Maria

Computational Statistics & Data Analysis 2006, 50(1): 61

http://www.sciencedirect.com/science/article/B6V8V-4D4MDK9-2/2/c9a3341...

Generalized structured additive regression based on Bayesian P-splines

Brezger, A.Lang, S.

Computational Statistics & Data Analysis 2006, 50(4): 967

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

Genetic algorithms for the selection of smoothing parameters in additive models

Krause, R├╝digerTutz, Gerhard

Computational Statistics 2006, 21(1): 9

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

Bayesian sigmoid shrinkage with improper variance priors and an application to wavelet denoising

ter Braak, C. J. F.

Comp Stat and Data Analysis 2006, 51: 1232

Improving Automatic Data Structure Generation for e-Science Applications

Guevara, V.Yakali, H.Belloum, A. S. Z.de Laat, C.

CollaborateCom 2006

Potential confounding in evaluating infection-control interventions in hospital settings: changing antibiotic prescription

Nijssen, S.Bootsma, M.Bonten, M.

Clin.Infect.Dis. 2006, 43(5): 616

http://www.ncbi.nlm.nih.gov/pubmed/16886156

Common variants of multiple genes that control reverse cholesterol transport together explain only a minor part of the variation of HDL cholesterol levels

Boekholdt, S. M.Souverein, O. W.Tanck, M. W.Hovingh, G. K.Kuivenhoven, J. A.Peters, R...

Clin.Genet. 2006, 69(3): 263

Common sodium channel promoter haplotype in asian subjects underlies variability in cardiac conduction

Bezzina, C. R.Shimizu, W.Yang, P.Koopmann, T. T.Tanck, M. W.Miyamoto, Y.Kamakura, S.R...

Circulation 2006, 113(3): 338

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...