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Publication overview

Optical spectroscopy for the classification of malignant lesions of the bronchial tree

Bard, M. P.Amelink, A.Skurichina, M.Noordhoek Hegt, V.Duin, R. P.Sterenborg, H. J.Hoo...

Chest 2006, 129(4): 995

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Altering the regioselectivity of cytochrome P450 CYP102A3 of Bacillus subtilis by using a new versatile assay system

Lentz, O.Feenstra, A.Habicher, T.Hauer, B.Schmid, R. D.Urlacher, V. B.

Chembiochem 2006, 7(2): 345

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

How to find the best homogeneous catalyst

Rothenberg, G.Hageman, J. A.Clerc, F.Fruhauf, H. W.Westerhuis, J. A.

Chem Industries (CRC Press) 2006, 115: 261

Maintenance of head and neck tumor gene expression profiles upon lymph node metastasis

Roepman, P.de Jager, A.Groot Koerkamp, M. J.Kummer, J. A.Slootweg, P. J.Holstege, F. ...

Cancer Res 2006, 66(23): 11110

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Chromosomal instability in MYH- and APC-mutant adenomatous polyps

Cardoso, J.Molenaar, L.de Menezes, R. X.van Leerdam, M.Rosenberg, C.Moslein, G.Sampso...

Cancer Res 2006, 66(5): 2514

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Microarray analysis on Runx2-deficient mouse embryos reveals novel Runx2 functions and target genes during intramembranous and endochondral bone formation

Vaes, B. L.Ducy, P.Sijbers, A. M.Hendriks, J. M.van Someren, E. P.de Jong, N. G.van d...

Bone 2006, 39(4): 724

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Centering, scaling, and transformations: improving the biological information content of metabolomics data

van den Berg, R. A.Hoefsloot, H. C.Westerhuis, J. A.Smilde, A. K.van der Werf, M. J.

BMC Genomics 2006, 7: 142

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation

Dutilh, B. E.Huynen, M. A.Snel, B.

BMC Genomics 2006, 7: 10

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohert studies

Verhaak, R. G. W.Staal, F. J. T.Valk, P. J. M. L.Reinders, M. J. T.de Ridder, D.

BMC Bioinformatics 2006, 7

A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls

Titulaer, M. K.Siccama, I.Dekker, L. J.van Rijswijk, A. L.Heeren, R. M.Sillevis Smitt...

BMC Bioinformatics 2006, 7: 403

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Modeling Sage data with a truncated gamma-Poisson model

Thygesen, H. H.Zwinderman, A. H.

BMC Bioinformatics 2006, 7: 157

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Correcting ligands, metabolites, and pathways

Ott, M. A.Vriend, G.

BMC Bioinformatics 2006, 7: 517

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Accelerating the reconstruction of genome-scale metabolic networks

Notebaart, R. A.van Enckevort, F. H.Francke, C.Siezen, R. J.Teusink, B.

BMC Bioinformatics 2006, 7: 296

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

A comparison of univariate and multivariate gene selection techniques for classification of cancer datasets

Lai, C.Reinders, M. J.van't Veer, L. J.Wessels, L. F.

BMC Bioinformatics 2006, 7: 235

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Testing statistical significance scores of sequence comparison methods with structure similarity

Hulsen, T.de Vlieg, J.Leunissen, J. A.Groenen, P. M.

BMC Bioinformatics 2006, 7: 444

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

PhyloPat: phylogenetic pattern analysis of eukaryotic genes

Hulsen, T.de Vlieg, J.Groenen, P. M.

BMC Bioinformatics 2006, 7: 398

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes

Horsman, S.Moorhouse, M. J.de Jager, V. C.van der Spek, P.Grosveld, F.Strouboulis, J....

BMC Bioinformatics 2006, 7: 120

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

SIMAGE: simulation of DNA-microarray gene expression data

Albers, C. J.Jansen, R. C.Kok, J.Kuipers, O. P.van Hijum, S. A.

BMC Bioinformatics 2006, 7: 205

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Generalized monotonic regression based on B-splines with an application to air pollution data

Leitenstorfer, F.Tutz, G.

Biostatistics 2006, 8(3): 654

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

In silico evolved lac operons exhibit bistability for artificial inducers, but not for lactose

van Hoek, M. J.Hogeweg, P.

Biophys.J 2006, 91(8): 2833

http://www.ncbi.nlm.nih.gov/pubmed/16877514

A statistical-mechanical theory of fibril formation in dilute protein solutions

van, Gestel J.de Leeuw, S. W.

Biophys.J 2006, 90(9): 3134

http://www.ncbi.nlm.nih.gov/pubmed/16603504

Enantioselective substrate binding in a monooxygenase protein model by molecular dynamics and docking

Feenstra, K. A.Hofstetter, K.Bosch, R.Schmid, A.Commandeur, J. N.Vermeulen, N. P.

Biophys J 2006, 91(9): 3206

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Generalized Additive Modeling with Implicit Variable Selection by Likelihood-Based Boosting

Tutz, GerhardBinder, Harald

Biometrics 2006, 62(4): 961

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

A goodness-of-fit test for multinomial logistic regression

Goeman, J. J.le Cessie, S.

Biometrics 2006, 62(4): 980

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Origin and evolution of the peroxisomal proteome

Gabaldon, T.Snel, B.van Zimmeren, F.Hemrika, W.Tabak, H.Huynen, M. A.

Biol Direct 2006, 1: 8

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Least absolute regression network analysis of the murine osteoblast differentiation network

van Someren, E. P.Vaes, B. L.Steegenga, W. T.Sijbers, A. M.Dechering, K. J.Reinders, ...

Bioinformatics 2006, 22(4): 477

AuberGene - a sensitive genome alignment tool

Szklarczyk, R.Heringa, J.

Bioinformatics 2006, 22(12): 1431

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli

Rodriguez, J. V.Kaandorp, J. A.Dobrzynski, M.Blom, J. G.

Bioinformatics 2006, 22(15): 1895

http://www.ncbi.nlm.nih.gov/pubmed/16731694

Combination of text-mining algorithms increases the performance

Malik, R.Franke, L.Siebes, A.

Bioinformatics 2006, 22(17): 2151

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Maximum significance clustering of oligonucleotide microarrays

de Ridder, D.Staal, F. J.van Dongen, J. J. M.Reinders, M. J. T.

Bioinformatics 2006, 22: 326

A Feature Selection Algorithm for Detecting Subtype Specific Sites for SMAD Receptor Binding

Marchiori, E.Pirovano, W.Heringa, J.Feenstra, K. A.

Bio-ICMLA06 (IEEE) 2006: 168

Formation of peroxisomes: present and past

Tabak, H. F.Hoepfner, D.Zand, A.Geuze, H. J.Braakman, I.Huynen, M. A.

Biochim Biophys Acta 2006, 1763(12): 1647

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Multiple Penalty Regression: Fitting and Extrapolating a Discrete Incomplete Multi-way Layout

Beran, Rudolf

Annals of the Institute of Statistical Mathematics 2006, 59(2): 171

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

On the Benjamini-Hochberg method

Feirrera, J. A.Zwinderman, A. H.Tanck, M. W.

Annals of Statistics 2006, 34(4): 1827

Multiple imputation of missing genotype data for unrelated individuals

Souverein, O. W.Zwinderman, A. H.Tanck, M. W.

Ann Hum Genet 2006, 70: 372

Biomarker discovery by proteomics: challenges not only for the analytical chemist

Horvatovich, P.Govorukhina, N.Bischoff, R.

Analyst 2006, 131(11): 1193

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

"ZNF674: a new KRAB-containing zinc-finger gene involved in nonsyndromic X-linked mental retardation"

Lugtenberg, D.Yntema, H. G.Banning, M. J. G.Oudakker, A. R.Firth, H. V.Willatt, L.Ray...

American J of Human Genetics 2006, 78(2): 265

Gene Networks and Gene prioritization

Franke, L.Fokkens, L.de Jong, E. D.Egmont-Petersen, M.van Bakel, H.Wijmenga, C.

American J of Human Genetics 2006

http://people.cs.uu.nl/dejong/index.html#publications

Alternans and spiral breakup in a human ventricular tissue model

ten Tusscher, K. H.Panfilov, A. V.

Am.J Physiol Heart Circ.Physiol 2006, 291(3)

http://www.ncbi.nlm.nih.gov/pubmed/16565318

Distinct clinical phenotypes associated with a mutation in the mitochondrial translation elongation factor EFTs

Smeitink, J. A.Elpeleg, O.Antonicka, H.Diepstra, H.Saada, A.Smits, P.Sasarman, F.Vrie...

Am J Hum Genet 2006, 79(5): 869

http://www.ncbi.nlm.nih.gov/pubmed/17033963

Feasability study on automated recognition of allergenic pollen: grass, birch and mugwort

Chen, C.Hendriks, E. A.Duin, R. P.Reiber, J. H. C.Hiemstra, P. S.De Weger, L. A.Stoel...

Aerobiologia 2006

ADP-ribose-1"-phosphatase activities of the human coronavirus 229E and SARS coronavirus X domains

Putics, A.Slaby, J.Filipowicz, W.Gorbalenya, A. E.Ziebuhr, J.

Advances in Experimental Medicine and Biology 2006, 581: 93

Design and assembly of virtual homogeneous catalyst libraries - towardsin silicocatalyst optimisation

Hageman, J. A.Westerhuis, J. A.Fruhauf, H. W.Rothenberg, G.

Advanced Synthesis and Catalysis 2006, 348: 361

Structure of a calcium-deficient form of influenza virus neuraminidase: implications for substrate binding

Smith, B. J.Huyton, T.Joosten, R. P.Kimm-Breschkin, J. L.Zhang, J. G.Luo, C. S.Lou, M...

Acta Crystallogr D Biol Crystallogr 2006, 62: 947

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

Apolipoprotein-E polymorphism and response to pravastatin in men with coronary artery disease (REGRESS)

Maitland-Van der Zee, A. H.Jukema, J. W.Zwinderman, A. H.Hallman, D. M.De Boer, A.Kas...

Acta Cardiol. 2006, 61(3): 327

Strategies for ontology negotiation: Finding the right level of generality

van Diggelen, J.Wiering, M. A.de Jong, E. D.

AAMS '06 2006

http://people.cs.uu.nl/dejong/publications/aamasws06.pdf

Local discriminant analysis

Loog, M.de Ridder, D.

18th International conference on pattern recognition 2006: 1

Optimizing Parameters of Coronary Vessel Image analysis using Evolution Strategies

Emmerich, M. T. M.Li, R.Eggermont, J.Bovenkamp, E. G. P.Back, T.Dijkstra, J.Reiber, J... Series, Editor

18th Belgium-Netherlands Conference on Artificial Intelligence 2006

Extending nk landscapes to the mixed-integer domain

Eggermont, J.Bovenkamp, E. G. P.Li, R.Emmerich, M. T. M.Back, T.Dijkstra, J.Reiber, J... Series, Editor

18th Belgium-Netherlands Conference on Artificial Intelligence 2006

Towards a Framework for Inductive Querying

de Bruin, J. Series, Editor

16th International Symposium on Methodologies for Intelligence Systems 2006, 4203: 419