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Publication overview

Filtering, FDR and power

van Iterson, MaartenBoer, JudithMenezes, Renee

BMC Bioinformatics 2010, 11(1): 450

http://www.biomedcentral.com/1471-2105/11/450

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

van Iersel, MartijnPico, AlexanderKelder, ThomasGao, JianjiongHo, IsaacHanspers, Kris...

BMC Bioinformatics 2010, 11(1): 5

http://www.biomedcentral.com/1471-2105/11/5

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

Tesson, B. M.Breitling, R.Jansen, R. C.

BMC Bioinformatics 2010, 11: 497

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

HAT: Hypergeometric analysis of Tiling-arrays with application to promoter-GeneChip data

Taskesen, E.Beekman, R.de Ridder, J.Wouters, B. J.Peeters, J. K.Touw, I. P.Reinders, ...

BMC Bioinformatics 2010, 11(275): 1

http://www.biomedcentral.com/content/pdf/1471-2105-11-275.pdf

Enrichment of homologs in insignificant BLAST hits by co-complex network alignment

Fokkens, L.Botelho, S. M.Boekhorst, J.Snel, B.

BMC Bioinformatics 2010, 11: 86

http://www.ncbi.nlm.nih.gov/pubmed/20152020

Gene expression profiling-based dissection of MLL translocated and MLL germline acute lymphoblastic leukemia in infants

Stam, Ronald W.Schneider, PaulineHagelstein, Jill A. P.van der Linden, Marieke H.Stum...

Blood 2010, 115(14): 2835

http://www.ncbi.nlm.nih.gov/pubmed/20032505

Functional Generalized Linear Models with Images as Predictors

Reiss, Philip T.Ogden, R. Todd

Biometrics 2010, 66(1): 61

http://apps.isiknowledge.com//InboundService.do?SID=W1hgMN9FP@9AppAFiO...

L1 penalized estimation in the Cox proportional hazards model

Goeman, Jelle J.

Biometrical Journal. Biometrische Zeitschrift 2010, 52(1): 70

http://www.ncbi.nlm.nih.gov/pubmed/19937997

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Robinson, M. D.McCarthy, D. J.Smyth, G. K.

Bioinformatics 2010, 26(1): 139

http://apps.isiknowledge.com/full_record.do?&colname=WOS&search_mode=C...

Integrating genome assemblies with MAIA

Nijkamp, K.Winterbach, W.van den Broek, M.A.Daran, J.M.Reinders, M.J.T.de Ridder, D.

Bioinformatics 2010

NoiseMaker: simulated screens for statistical assessment

Kwan, PhoenixBirmingham, Amanda

Bioinformatics 2010, 26(19): 2484

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks

Kuzniar, ArnoldDhir, SomduttaNijveen, HarmPongor, SándorLeunissen, Jack A. M.

Bioinformatics 2010

http://dx.doi.org/10.1093/bioinformatics/btq435

Inferring combinatorial association logic networks in multimodal genome-wide screens

de Ridder, J.Gerrits, A.Bot, J. J.de haan, G.Reinders, M. J. T.Wessels, L. F. A.

Bioinformatics 2010, 26: 149

http://bioinformatics.oxfordjournals.org/cgi/reprint/26/12/i149

Computational quantification of metabolic fluxes from a single isotope snapshot: application to an animal biopsy

Binsl, T. W.Alders, D. J.Heringa, J.Groeneveld, A. B.van Beek, J. H.

Bioinformatics 2010, 26(5): 653

http://www.ncbi.nlm.nih.gov/pubmed/20097912

The Role of Fielded Applications in Machine Learning Education

Knobbe, A.Koopman, A.Kok, J.N.Obladen, B.Bosma, C.Galenkamp, H.

Benelearn 2010 2010

Measuring non-steady-state metabolic fluxes in starch-converting faecal microbiota

Binsl, T.W., de Graaf, A.A., Venema, K., Heringa J., Maathuis, A., de Waard, P., van ...

Beneficial Microbes 2010, 1(4)

Merging multiple sources of information using dissimilarity based approaches

Ibba, A.Lee, W.J.Duin, R.P.W.

ASCI 2010 2010

Multiple people tracking and pose estimation

Huo, F.Hendriks, E.A.

ASCI 2010 2010

In vitro evolution of styrene monooxygenase from Pseudomonas putida CA-3 for improved epoxide synthesis

Gursky, Lucas J.Nikodinovic-Runic, JasminaFeenstra, K. AntonO’Connor, Kevin E.

Applied Microbiology and Biotechnology 2010, 85(4): 995

http://www.springerlink.com/index/10.1007/s00253-009-2096-3

The sequential rejection principle of familywise error control

Goeman, Jelle J.

The Annals of Statistics 2010, 38(6): 3782

http://projecteuclid.org/euclid.aos/1291126973

Computational modeling of the human serum proteome response to colon resection surgery

Xu, C. J.Hoefsloot, H. C.Dijkstra, M.Havenga, K.Roelofsen, H.Vonk, R. J.Smilde, A. K.

Anal Chim Acta 2010, 661(1): 20

http://www.ncbi.nlm.nih.gov/pubmed/20113711

Prenatal exposure to apoE deficiency and postnatal hypercholesterolemia are associated with altered cell-specific lysine methyltransferase and histone methylation patterns in the vasculature

Alkemade, Fanneke E.van Vliet, PatrickHenneman, Petervan Dijk, Ko WillemsHierck, Beer...

The American Journal of Pathology 2010, 176(2): 542

http://www.ncbi.nlm.nih.gov/pubmed/20035052

Association of repeatedly measured intermediate risk factors for complex diseases with high dimensional SNP data

Waaijenborg, S.Zwinderman, A. H.

Algorithms.Mol Biol 2010, 5: 17

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2828454/

Evidence for RNA recombination between distinct isolates of Pepino mosaic virus

Hasiow-Jaroszewska, B.Kuzniar, A.Peters, S. A.Leunissen, J. A.Pospieszny, H.

Acta Biochim Pol 2010, 57(3): 385

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&d...

The task dependent effect of tags and ratings on social media acces

Clements, M.de Vries, A. P.Reinders, M. J. T.

Acm transactions on information systems 2010, 2(3): 111

http://msp.ewi.tudelft.nl/sites/default/files/Clements2010_TOIS.pdf

OTESC: Online transformation estimation between stereo cameras

Schreuder, T.Hendriks, E.A.

ACM MM int. workshop on 3D Video processing 2010 2010

Classifying three-way seismic volcanic data by dissimilarity representation

Porro-Muñoz, D.Duin, R. P. W.Orozco-Alzate, M.Talavera, I.Londoño-Bonilla, J.M.

20th International Conference on Pattern Recognition 2010

A study on combining sets of differently measured dissimilarities

Ibba, A.Duin, R.P.W.

20th International Conference on Pattern Recognition 2010

ROC analysis and cost-sensitive optimization for hierarchical classifiers

Gangeh, M.J.Lai, C.Landgrebe, T.C.W.Duin, R.P.W.

20th International Conference on Pattern Recognition 2010

Random subspace method in categorization

Gangeh, M.J.Kamel, M.Duin, R.P.W.

20th International Conference on Pattern Recognition 2010

Classification of volcano events observed by multiple seismic stations

Duin, R.P.W.Orozco-Alzate, M.Londono-Bonilla, J.M.

20th International Conference on Pattern Recognition 2010

Prototype selection for dissimilarity representation by a genetic algorithm

Calaña, Y.P.Reyes, E.G.Orozco Alzate, M.Duin, R. P. W.

20th International Conference on Pattern Recognition 2010

Pattern recognition as a human centred non-Euclidian problem

Duin, R. P. W.

12th International Conference on Enterprise Information Systems 2010

Image Registraton and Realignment using Evolutionary Algorithms with High resolution 3D model from Human Liver.

Yan, K.Bertens, L.F.M.Verbeek, F.J. Sappa, A.D.

11th IASTED International Conference on Computer Graphics and Imaging. 2010

An experimental study on combining Euclidean distances

Lee, W.J.Duin, R.P.W.Ibba, A.Loog, M.

2nd International Workshop on Cognitive Information Processing (CIP) 2010

Dissimilarity-based classification of data with missing attributes

Millan-Giraldo, M.Duin, R.P.W.Sanchez, J.S.

The 2nd International IAPR Workshop on Cognitive Information Processing 2010

Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm

Nezhinsky, A.E.Kruisselbrink, J.Verbeek, F.J. Fred, A.Filipe, J.Gamboa, H.

1st International Conference on Bioinformatics 2010

Real time people tracking and pose estimation

Huo, F.Hendriks, E. A.

1st ACM international workshop om Multimodal pervasive video analysis (ACM) 2010

Work flows in life science

Wassink, I.

 2010

http://dx.doi.org/10.3990/1.9789036529327

Patterns that Matter

van Leeuwen, M.

 2010

http://www.cs.uu.nl/groups/ADA/pubs/2010/patterns_that_matter-vanleeuw...

Vertical Integration of high-throughput measurements to derive functional and regulatory interactions in S. cerevisiae

van Berlo, R.

 2010

A picture is worth a thousand words

Thomee, B.

 2010

https://openaccess.leidenuniv.nl/bitstream/1887/16108/1/Thesis+Final+S...

Automatic sign language recognition inspired by human sign perception

ten Holt, G. A.

 2010

Comparing building blocks of life: sequence alignment and evaluation of predicted structural and functional features

Pirovano, Walter

 2010

Phenotype-guided disease investigation using bioinformatics

Oti, M.

 2010

Transcriptome profiling of infectious diseases and cancer in zebrafish.

Ordas, A.

 2010

Small RNA evolution and distribution patterns based on digital gene expression profiling

Linsen, S. E.

 2010

http://igitur-archive.library.uu.nl/dissertations/2010-0121-200403/lin...

Exploiting noisy and incomplete biological data for prodiction and knowledge discovery

Li, Y.

 2010

Do you know what I know? Situational awareness of co-located teams in multidisplay environments

Kulyk, O.

 2010

http://eprints.eemcs.utwente.nl/17117/01/Thesis_OlgaKulyk_optimized.pd...

X-ray structure re-refinement. Combining old data with new methods for better structural bioinformatics

Joosten, R.

 2010